I am running into the following problem while packaging nexus for NixOS. I am trying to update the package in nixpkgs to the latest version so that the recent security issues are fixed. On startup ...

I install pilon by conda, and my code is: $ pilon --genome 3.contigs.fasta --fix all --changes --frags 3ai.sorted.bam --output G3 --outdir G3 --vcf at org ...